@article {83011,
	title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {127},
	year = {2018},
	note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family.  Maps, charts.},
	month = {2018, Oct.},
	pages = {p.98-118},
	keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy},
	doi = {https://doi.org/10.1016/j.ympev.2018.04.041 },
	author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.}
}
@book {80381,
	title = {Oregon Estuarine Invertebrates:  Rudy{\textquoteright}s Illustrated Guide to Common Species},
	volume = {1-3},
	year = {2017},
	note = {"Original edition by Paul and Lynn Rudy."  Volume 1. Cnidaria, Nemertea, Annelida, Sipuncula -- , Volume 2. Arthropoda -- , Volume 3. Mollusca, Phoronida, Echinodermata, Chordata, appendices. Advances in genetics have revolutionized the classification of aquatic invertebrates.  Many animals have been given new names that more accurately reflect their relationships with other species.  For this reason, it was necessary to create a new edition of Paul and Lynn Rudy{\textquoteright}s classic {\textquotedblleft}Oregon Estuarine Invertebrates.{\textquotedblright}  This third edition is a vast, although not quite complete, three-volume expansion of the original work.  Rudy{\textquoteright}s original line drawings have been retained.  There is a new section on taxonomy, and most descriptive sections have been expanded.  The bibliography section has been brought up-to-date with contemporary references.  The invaluable {\textquotedblleft}Possible Misidentifications{\textquotedblright} section has been expanded.  A few species not yet updated will follow.  This magnum opus is available on the internet and should be referenced by anyone wanting to identify and learn more about these familiar, fascinating animals.},
	publisher = {University of Oregon Libraries, Oregon Institute of Marine Biology},
	organization = {University of Oregon Libraries, Oregon Institute of Marine Biology},
	edition = {3rd ed.},
	chapter = {865 p.},
	address = {[Charleston, Oregon] },
	keywords = {annelids, aquatic invertebrates, aquatic worms, arthropods, bibliography, brachiopods, cnidarians, echinoderms, general, identification, molluscs, segmented worms, taxonomy, tunicates},
	url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/18839  },
	author = {Hiebert, Terra C. and Butler, Barbara and Shanks, Alan L. and Rudy, Paul}
}
@book {80576,
	title = {The Northwest Coastal Explorer:  Your Guide to the Places, Plants, and Animals of the Pacific Coast},
	year = {2016},
	note = {Here{\textquoteright}s a guidebook with a difference.  Although suggested Pacific Northwest trips are included, this book is less about destinations and much more about the journey and what will be found along the way.  Packed with beautiful photographs and page-long descriptions of the plants and animals of the Northwest Coast, this book will inform and delight. For succinct descriptions of the life of the region, from the sea palm to the brown pelican, from the mole crab to the Roosevelt elk, this is the place to go for succinct species descriptions at a popular level.},
	pages = {283 p.},
	publisher = {Timber Pr},
	organization = {Timber Pr},
	chapter = {283 p.},
	address = {Portland, Or.},
	keywords = {amphibians, aquatic invertebrates, aquatic plants, biology, birds, general, general ecosystem description, geology, mammals, oceanography, terrestrial plants, tourism},
	author = {Steelquist, Robert}
}
@article {76436,
	title = {Nursery Functions of U.S. West Coast Estuaries:  The State of Knowledge for Juveniles of Focal Invertebrate and Fish Species},
	year = {2014},
	note = {This report summarizes what is known about the role of estuaries as nurseries for important aquatic species. The authors inventoried 303 West Coast estuaries and categorized each by class (lagoonal, riverine, embayment and sound) and subclass (estuarine coastal subtidal, tidal channel/creek, slough and lagoon). They examined 15 different species that used estuaries and noted what is known and not known about their life cycles and use of estuaries. {\textquotedblleft}Together with the estuary inventory and the geodatabase, this report represents the first stage in a larger effort to better understand the nursery functions of West Coast estuaries for fish and invertebrates.{\textquotedblright} (p.3)},
	pages = {168 p.},
	institution = {The Nature Conservancy},
	address = {Arlington, Va.},
	keywords = {aquatic invertebrates, Bat stingray = Myliobatus californicus (Aetobatus californicus), Bay shrimp = Crangon franciscorum, Brown rockfish = Sebastes auriculatus, California halibut = Paralichthys californicus, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, crustaceans, Dungeness crab =   Metacarcinus magister (Cancer magister), eelgrass = Zostera marina, English sole = Parophrys vetulus, estuaries, fishes, general, geographic distribution, Green sturgeon = Acipenser medirostris, habitats, juvenile fish, Leopard shark = Triakis semifasciata, life history information, Oregon, Pacific Coast, Pacific herring =  Clupea pallasi, Pacific staghorn sculpin = Leptocottus armatus, Shiner perch = Cymatogaster aggregate, Starry flounder = Platichthys stellatus, steelhead trout = Oncorhynchus mykiss},
	url = {https://www.scienceforconservation.org/products/nursery-functions-of-estuaries},
	author = {Hughes, Brent B. and Levey, Matthew D. and Brown, Jennifer A. and Fountain, Monique C. and Carlisle, Aaron B. and Litvin, Steven Y. and Greene, Correigh M. and Heady, Walter N. and Gleason, Mary G.}
}
@article {51696,
	title = {Oregon agriculture and fisheries statistics},
	year = {2013},
	note = {Broad summary. Does not give landings by port, but does give oyster production on State lands by bay for Coos, Netarts, Tillamook, Umpqua and Yaquina Bays.},
	keywords = {aquatic invertebrates, bivalves, catch statistics, Crassostrea gigas = Pacific oyster, general, molluscs, Yaquina Bay}
}
@book {83008,
	title = {Freshwater Mussels of the Pacific Northwest},
	year = {2009},
	note = {2nd edition.  Freshwater mussels are among the most endangered animals on earth.  Over 70\% of all freshwater mussel species in North America are considered threatened or endangered, and 35 species are believed to be extinct.  Freshwater mussels serve as important bioindicators, being sensitive to stream temperatures, dissolved oxygen, sedimentation and pollution.  This valuable guide will aid in awareness of the value of these species, as well as in identification.},
	pages = {51 p.},
	publisher = {Xerxes Society for Invertebrate Conservation},
	organization = {Xerxes Society for Invertebrate Conservation},
	edition = {2nd},
	chapter = {51 p.},
	address = {Portland, Or.  },
	keywords = {anatomy, aquatic invertebrates, bivalves, general, life history information, mollusks, mussels, taxonomy, water quality},
	url = {https://xerces.org/sites/default/files/2018-05/09-002_02_XercesSoc_Freshwater-Mussels-of-the-PNW_web.pdf},
	author = {Nedeau, Ethan Jay and Smith, Allan K. and Stone, Jen and Jepsen, Sarina}
}
@article {51266,
	title = {Macroinvertebrate Report: Oregon Coast Coho Evolutionarily Significant Unit (2006-2007):  Final Report},
	year = {2008},
	note = {One way to measure a stream{\textquoteright}s health is to count the aquatic insects in it.  {\textquotedblleft}This report summarizes macroinvertebrate data collected in cooperation with the ODFW in the twenty-one independent coho populations units from 2006-2007. These data were collected by ODFW crews and analyzed by ODEQ staff. Biological integrity, temperature stress and fine sediment stress were evaluated for each of the twenty-one population units.{\textquotedblright} (p.4)   There are good data here.  },
	pages = {34 p.},
	institution = {Oregon. Dept. of Environmental Quality. Laboratory and Environmental Assessment Division,},
	address = {Hillsboro, Or.},
	keywords = {Alsea River, aquatic invertebrates, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, ecosystem health, insects, Lower Umpqua River, Middle Umpqua River, Necanicum River, Nehalem River, Nestucca River, Salmon River, sediment data, sediments, Siletz River, Siuslaw River, South Umpqua River, Tillamook Bay, water temperature, Yachats River, Yaquina River},
	url = {https://library.state.or.us/repository/2009/200902091133141/},
	author = {Hubler, Shannon and Oregon. Dept. of Environmental Quality. Laboratory and Environmental Assessment Division, and Oregon Watershed Enhancement Board,}
}
@article {51941,
	title = {Oregon Bay Clam Identification:   Clams Harvested in Oregon Estuaries},
	year = {2007},
	note = {Color poster. "All photographs by Scott Groth, ODFW, except when noted. (printed 2007)"},
	institution = {Oregon Dept. of Fish and Wildlife},
	address = {Newport, Or.},
	keywords = {aquatic invertebrates, Arctic hiatella = Hiatella arctica, Baltic clam = Macoma balthica, Bentnose clam = Macoma nasuta, bivalves, blue mussel = Mytilus edulis, Bodega clam = Tellina bodegensis, Butter clam = Saxidomus giganteus, Cockle clam = Clinocardium nuttallii, estuaries, Gaper clam = Tresus capax, general, identification, Irus clam = Irus ishibashianus, Jackknife clam = Solen sicarius, Littleneck clam = Leukoma staminea, molluscs, Northwest ugly clam = Entodesma saxicola, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific falsejingle = Pododesmus cepio, Pacific oyster = Crassostrea gigas, Pacific razor clam = Siliqua patula, Purple varnish clam = Nuttallia obscurata, recreational fisheries - shellfish, Rough piddock = Zirfaea pilsbryi, Sand clam = Macoma secta, Softshell clam = Mya arenaria},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/h415pb28s},
	author = {Oregon Dept. of Fish and Wildlife. Marine Resources Program,}
}
@book {83253,
	title = {Macroinvertebrates of the Pacific Northwest:  A Field Guide},
	year = {2003},
	note = {A good way to assess the health of a stream involves taking a census of its resident aquatic invertebrates. This field guide packs a lot of information into a few pages {\textendash} scientific and popular names, size, range, habitat, behavior, type of feeder, and tolerance to anthropogenic stress. Most species identified are aquatic insects. Color photographs.  The guide was originally issued as a companion to the book Stream Bugs as Biomonitors:  Guide to Pacific Northwest Macroinvertebrate Monitoring.},
	publisher = {Xerces Society},
	organization = {Xerces Society},
	chapter = {15 p.},
	address = {Portland, Or.},
	keywords = {annelids, aquatic invertebrates, bivalves, crustaceans, ecosystem health, Field guide, gastropods, identification, insects, mollusks, mussels, nematodes},
	url = {https://www.xerces.org/sites/default/files/2018-05/08-009_01_Macroinvertebrate-Field-Guide.pdf},
	author = {Adams, Jeff and Vaughan, Mace and Xerces Society,,}
}
@book {83266,
	title = {Global invader: the European green crab},
	series = {ORESU-B},
	volume = {no.01-001},
	year = {2001},
	note = { An excellent look at what was known about the European green crab early in its invasion of Oregon waters.  Includes color photographs of Oregon crabs to aid in identification.},
	pages = {123 p.},
	publisher = {Oregon Sea Grant, Oregon State University },
	organization = {Oregon Sea Grant, Oregon State University },
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, crustaceans, decapods, European green crab = Carcinus maenus, introduced species, predation},
	url = {https://repository.library.noaa.gov/view/noaa/44992 },
	author = {Yamada, Sylvia Behrens and Office of Sea Grant and Extramural Programs. and Oregon State University Sea Grant College Program.}
}
@article {51801,
	title = {A Biological Survey of Rocky Shores in Oregon:  Data Entry and Preliminary Analysis / Report Prepared for the Oregon Department of Fish and Wildlife},
	year = {1997},
	note = {There are many guides to Oregon{\textquoteright}s rocky shores. This one is unique in that the author attempted to match species to locations. If you want to know if a certain kind of algae or anemone was found in 1994 (the year of the survey) at Boiler Bay, or any of the locations studied, this is a great resource.  },
	pages = {51 p.},
	keywords = {algae, aquatic invertebrates, Boiler Bay, Cape Blanco, Cape Ferrelo, Cape Lookout, Chetco Cove, habitats, Humbug Mountain, North Boardman, North Cove, Otter Crest, Rocky Point, spatial distribution, species list, Sunset Bay, vertical distribution, Yachats},
	url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/6050},
	author = {Goddard, Jeff}
}
@article {51376,
	title = {Guide to Oregon{\textquoteright}s Rocky Intertidal Habitats},
	year = {1997},
	note = {This is an updated version of {\textquotedblleft}Plants and animals of Oregon{\textquoteright}s rocky intertidal habitat.{\textquotedblright} Excellent color photographs and paintings to help you identify what you see on the rocky shore.  Maps. A good introduction to Oregon tidepools.  },
	pages = {46 p.},
	institution = {Oregon Dept. of Fish and Wildlife. Marine Resources Program,},
	address = {Newport, Or.},
	keywords = {aquatic invertebrates, aquatic vegetation, birds, bivalves, Bob Creek to Bray Point, Boiler Bay, brown algae, bryozoans, Cape Perpetua, crustaceans, fishes, gastropods, general ecosystem description, green algae, habitats, hydroids, identification, marine mammals, molluscs, Neptune State Park, Otter Rock, recreation, red algae, sea anemones, sea stars, Seal Rock, sponges, tunicates, worms, Yachats State Parks, Yaquina Head},
	url = {https://www.researchgate.net/publication/283734404_Guide_to_Oregon\%27s_Rocky_Intertidal_Habitats},
	author = {Mohler, June E. and Fox, David S. and Hastie, Bill (William O.) and Oregon. Dept. of Fish and Wildlife,}
}
@article {51366,
	title = {Plants and Animals of Oregon{\textquoteright}s Rocky Intertidal Habitat},
	year = {1989},
	note = {Color photographs with descriptions to help you identify what you see on the rocky shore.  Maps. A good introduction to Oregon tidepools.  },
	pages = {32 p.},
	institution = {Oregon Dept. of Fish and Wildlife,},
	address = {Newport, Or.},
	keywords = {aquatic invertebrates, aquatic vegetation, birds, bivalves, Bob Creek to Bray Point, Boiler Bay, brown algae, bryozoans, Cape Perpetua, crustaceans, fishes, gastropods, general ecosystem description, green algae, habitats, hydroids, identification, marine mammals, molluscs, Neptune State Park, Otter Rock, recreation, red algae, sea anemones, sea stars, Seal Rock, sponges, tunicates, worms, Yachats State Park, Yaquina Head},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/j67314445},
	author = {McCrae, Jean. and Osis, Laimons}
}
@book {51691,
	title = {The ecology of estuarine channels of the Pacific Northwest coast: a community profile},
	series = {FWS/OBS},
	volume = {no.83/05},
	year = {1983},
	note = {Overview of assemblages in estuarine channels in this region:  benthic fauna, epifauna, zooplankton, fishes, birds, mammals. Illustrations, charts and maps.},
	publisher = {U.S. Department of the Interior.  Fish and Wildlife Service},
	organization = {U.S. Department of the Interior.  Fish and Wildlife Service},
	chapter = {101 pp.},
	address = {Washington, D.C.},
	keywords = {Alsea River estuary, aquatic invertebrates, aquatic vegetation, biological, birds, chemical, Chetco River estuary, Columbia River estuary, community ecology, Coos River estuary, Coquille River estuary, Elk River estuary, estuarine dynamics, fishes, general, geological, marine mammals, natural resource management, Necanicum River estuary, Nehalem River estuary, Nestucca River estuary, Netarts estuary, physical, Pistol River estuary, primary production, Rogue River estuary, Salmon River Estuary, Sand Lake Estuary, Siletz River estuary, Siuslaw River estuary, Sixes River estuary, species list, terrestrial mammals, Tillamook estuary, Umpqua River estuary, Yaquina Bay},
	url = {https://pubs.er.usgs.gov/publication/fwsobs83_05},
	author = {Simenstad, Charles A. and United States. National Coastal Ecosystems Team}
}
@mastersthesis {51676,
	title = {Shell and Archaeology:  An Analysis of Shellfish Procurement and Utilization on the Central Oregon Coast},
	year = {1981},
	note = {The Neptune archeological site is located less than 3 miles south of Yachats on the Oregon coast.  Several of the shellfish species mentioned in this study originated in the Yachats River. This is a nice report on shellfish remains at the site. Tables give the environmental requirements of shellfish and identify which species appeared at which archeological sites.  Includes maps, photographs of tools.},
	pages = {122 p.},
	school = {Oregon State University},
	type = {Masters Thesis},
	edition = {M.A.I.S.},
	chapter = {Interdisciplinary Studies: Anthropology, History, General Science},
	address = {Corvallis, Or.},
	keywords = {Alsea Indians, aquatic invertebrates, archeology, Bentnose clam = Macoma nasuta, bivalves, California mussel = Mytilus californianus, gastropods, Giant barnacle = Balanus nubilus, Littleneck clam = Leukoma staminea, mollusks, Neptune Site, Siuslaw Indians, Yachats River},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/vx021g99q},
	author = {Barner, Debra C.}
}
@book {83006,
	title = {The stoneflies (Plecoptera) of the Pacific Northwest},
	series = {Oregon State Monographs. Studies in Entomology },
	volume = {no.3},
	year = {1959},
	note = {Stoneflies are aquatic insects living in cool, well-oxygenated streams.  They are sensitive to the presence of pollutants, and their presence is a valuable indicator of good water quality.  They are important food sources for fish, particularly trout.  This classic guide includes a dichotomous key and numerous illustrations to help identify species.  Note:  species names may have changed since this publication was written.},
	pages = {85 p.},
	publisher = {Oregon State University},
	organization = {Oregon State University},
	chapter = {95 p.},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, general, geographic distribution, insects, life history, stoneflies, taxonomy},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/sf268986j },
	author = {Jewett, Stanley Gordon, Jr.}
}
