@article {83011, title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae}, journal = {Molecular Phylogenetics and Evolution}, volume = {127}, year = {2018}, note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family. Maps, charts.}, month = {2018, Oct.}, pages = {p.98-118}, keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy}, doi = {https://doi.org/10.1016/j.ympev.2018.04.041 }, author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.} } @article {54926, title = {Evaluating the Population Genetic Structure of Dungeness Crab (Cancer magister) off the Oregon Coast}, year = {2014}, note = {{\textquotedblleft}The goal of this study was to evaluate the genetic diversity and population genetic structure of Dungeness crab off the Oregon coast and provide baseline data that could be used to help inform decisions on marine spatial planning. From a conservation and management standpoint, it is critical to determine the population genetic structure and genetic diversity within subpopulations to ensure the long term viability of a species.{\textquotedblright} (p.4-5) There are clear and helpful explanations of the concepts and issues involved in this study. Nicely done.}, pages = {20 p.}, institution = {Oregon Wave Energy Trust,}, address = {Portland, Or.}, keywords = {Astoria, Brookings, Coos Bay, Dungeness crab = Metacarcinus magister (Cancer magister), Garibaldi, general, genetics, Newport (Or.), population biology, Port Orford}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/w0892g295}, author = {O{\textquoteright}Malley, Kathleen and Roegner, Curtis and Oregon. Wave Energy Trust, and Oregon. Dungeness Crab Commission,} } @mastersthesis {37141, title = {Patterns of Natural Selection and Demography in Coastal Oregon Coho Salmon (Oncorhynchus kisutch) Populations: Evidence from Neutral and Olfactory Receptor Gene-Linked Markers }, year = {2009}, note = {"For Pacific salmon, the evolution of local adaptations depends upon the species{\textquoteright} propensity to return, or {\textquotedblleft}home{\textquotedblright}, to natal streams at time of reproduction. Pacific salmon use olfactory cues to guide homing behavior, yet little is known about the genetics of olfaction in salmon. In this study, I use putatively neutral microsatellite markers to estimate demographic parameters and describe the population genetic structure of Oregon Coastal coho salmon (Oncorhynchus kisutch). . . I then used genomic sequence data from nine species of salmon and trout to infer the evolutionary history for eight olfactory receptor genes. . . Finally, I used molecular markers linked to olfactory receptor genes to test for a signal of selection among coho salmon populations from different rivers." (from the Abstract) Found the Coos Bay salmon were the major source of straying in the south coast, while Nehalem River salmon did most of the straying on the north coast. }, pages = {111 p.}, school = {Oregon State University}, type = {Doctoral dissertation}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife, Fisheries}, address = {Corvallis, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, genetics, geographic distribution, population biology, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/gh93h230k}, author = {Johnson, Marc Aaron} } @article {51966, title = {Genetic structure, migration, and patterns of allelic richness among coho salmon (Oncorhynchus kisutch) populations of the Oregon coast}, journal = {Canadian Journal of Fisheries and Aquatic Sciences}, volume = {65}, year = {2008}, note = {Studied genotypic data from eight microsatellite loci to characterize Oregon coastal coho salmon. "The Coos, Umpqua, Smith and Coquille rivers appear to form a southern group, whereas the Nehalem, Tillamook, Wilson, Necanicum, Nestucca, Trask, and Salmon rivers form a loosely defined northern group." (p.1278) Major sources of migrating (straying) coho are the Coos River in the south and the Nehalem River in the north. "Consequently, populations of the central coast ... receive relatively balanced immigrant contributions from the major source populations." (p.1280) In this context, the Yachats River is anomalous. While it receives some of the highest numbers of immigrant fish, the source of immigrants varies from year to year, and "aligns with distant southern and northern populations between years." (p.1278)}, pages = {p.1274-1285}, keywords = {Coho salmon = Oncorhynchus kisutch, genetics, geographic distribution, population biology}, author = {Johnson, Marc A. and Banks, Michael A.} } @article {51881, title = {Updated status of federally listed ESUs of west coast salmon and steelhead}, volume = {no.66}, year = {2005}, pages = {598 pp.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Northwest Fisheries Science Center,}, address = {Seattle, Wash.}, keywords = {Alsea River, Beaver Creek, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, depleted populations, Devil{\textquoteright}s Lake, fecundity, genetics, hatcheries, human impacts, hybridization, Necanicum River, Nehalem River, Nestucca River, population biology, population count, reproductive behavior, Rogue River, Salmon River, salmonid species, Sand Lake, Siletz River, Siuslaw River, statistical analysis, steelhead trout = Oncorhynchus mykiss, Tenmile Lake, Tillamook Bay, Umpqua River Basin, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3413}, editor = {Good, Thomas P. and Waples, Robin S. and Adams, Pete (eds.)} } @book {36746, title = {Status review of coastal cutthroat trout from Washington, Oregon, and California}, series = {NOAA Technical Memorandum NMFS-NWFSC}, year = {1999}, note = {The Biological Review Team concluded that coastal stocks of cutthroat trout were not presently at risk of extinction. Appendix 1-A gives the known history of hatchery releases in streams and lakes.}, month = {1999}, publisher = {Northwest Fisheries Science Center}, organization = {Northwest Fisheries Science Center}, address = {[Seattle, Wash.]}, keywords = {Alsea Fish Hatchery, Alsea River, Chetco River, Coos Bay, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, Devils Lake, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, history, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Rogue River, Salmon River, salmonid species, Sand Creek, Siltcoos Lake, Siuslaw River, Smith River, statistics, Tahkenitch Lake, Tenmile Creek, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3066}, author = {Johnson, Orlay W. and Ruckelshaus, Mary H. and Grant, W. Stewart and Waknitz, F. William and Garrett, Ann M. and Bryant, Gregory J. and Neely, Kathleen and Hard, Jeffrey J. and Northwest Fisheries Science Center (U.S.),} } @article {51831, title = {Status review of chinook salmon from Washington, Idaho, Oregon, and California}, volume = {no.35}, year = {1998}, note = {NOAA seems to have an earlier version of this report (their version, Dec. 1997) on their website as the source for the online copy. The team studying Chinook salmon felt that for the Oregon Coast this species is not in danger of extinction, nor thought to become extinct "in the forseeable future" (p.249). Appendix D gives the known history of hatchery releases. }, pages = {443 pp.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.] }, keywords = {Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, history, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3034}, author = {Myers, James M. and Kope, Robert G. and Bryant, Gregory J. and Teel, David; and Lierheimer, Lisa J. and Wainwright, Thomas C. and Grant, W. Stewart and Waknitz, F. William and Neely, Kathleen and Lindley, Steven T. and Waples, Robin S.} }